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A list of all the posts and pages found on the site. For you robots out there, there is an XML version available for digesting as well.
Pages
Posts
Updated 447-way Zoonomia Alignment
Published:
(I’m going to start posting notes on new alignments I’ve released, and maybe other related stuff, here….)
portfolio
Portfolio item number 1
Short description of portfolio item number 1
Portfolio item number 2
Short description of portfolio item number 2
publications
Progressive Cactus is a multiple-genome aligner for the thousand-genome era
Published in Nature, 2020
A draft human pangenome reference
Published in Nature, 2023
Pangenome graph construction from genome alignments with Minigraph-Cactus
Published in Nature Biotechnology, 2023
Personalized pangenome references
Published in Nature Methods, 2024
Complete sequencing of ape genomes
Published in Nature, 2025
Adaptive radiation and social evolution of the ants
Published in Cell, 2025
talks
Variant representation on graphs (with Heng Li)
Published:
Explain how genetic variants are currently represented in pangenome graphs, and discuss ideas for future improvements. The meeting agenda is here and the session agenda here.
Better graph variants using this one weird trick
Published:
Detail graph construction improvements and how they can lead to state of the art variant calls using data from the second HPRC data release.
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.