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Progressive Cactus is a multiple-genome aligner for the thousand-genome era

Published in Nature, 2020

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A draft human pangenome reference

Published in Nature, 2023

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Pangenome graph construction from genome alignments with Minigraph-Cactus

Published in Nature Biotechnology, 2023

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Personalized pangenome references

Published in Nature Methods, 2024

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Complete sequencing of ape genomes

Published in Nature, 2025

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Adaptive radiation and social evolution of the ants

Published in Cell, 2025

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Variant representation on graphs (with Heng Li)

Published: April 04, 2025

Explain how genetic variants are currently represented in pangenome graphs, and discuss ideas for future improvements. The meeting agenda is here and the session agenda here.

Better graph variants using this one weird trick

Published: October 06, 2025

Detail graph construction improvements and how they can lead to state of the art variant calls using data from the second HPRC data release.

Teaching experience 1

Undergraduate course, University 1, Department, 2014

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Teaching experience 2

Workshop, University 1, Department, 2015

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